#!/bin/sh
set -eu
PRG="$(basename -- "$0")"
case "$PRG" in
picard-tools)
	echo 1>&2 'Warning: picard-tools is deprecated and should be replaced by PicardCommandLine'
	;;
PicardCommandLine)
	;;
*)
	set -- "$PRG" "$@"
	;;
esac
export USE_LIBRARY_PATH=USE_LIBRARY_PATH
export PICARD_CLASSPATH=/usr/share/java/picard.jar:/usr/share/java/htsjdk.jar:/usr/share/java/guava.jar:/usr/lib/jvm/default-java/lib/tools.jar:/usr/share/java/commons-lang3.jar:/usr/share/java/gkl.jar:/usr/share/java/gatk-native-bindings.jar:/usr/share/java/barclay.jar

exec java ${JAVA_OPTIONS-} -cp $PICARD_CLASSPATH picard.cmdline.PicardCommandLine "$@"
