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                                  ---  PhyML 20110919  ---                                             
                            http://www.atgc-montpellier.fr/phyml                                          
                         Copyright CNRS - Universite Montpellier II                                 
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. Sequence filename: 			proteic
. Data set: 				#1
. Tree topology: 			fixed
. Initial tree: 			user tree (ptree)
. Model of amino acids substitution: 	Custom (mtDP1.paml)
. Number of taxa: 			37
. Log-likelihood: 			-15094.33979
. Unconstrained likelihood: 		-3160.97666
. Parsimony: 				2072
. Tree size: 				5.04849
. Discrete gamma model: 		Yes
  - Number of categories: 		4
  - Gamma shape parameter: 		0.649
. Proportion of invariant: 		0.213

. Run ID:				test3
. Random seed:				1316597088
. Subtree patterns aliasing:		no
. Version:				20110919
. Time used:				0h0m7s (7 seconds)

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 Suggested citations:
 S. Guindon, JF. Dufayard, V. Lefort, M. Anisimova, W. Hordijk, O. Gascuel
 "New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0."
 Systematic Biology. 2010. 59(3):307-321.

 S. Guindon & O. Gascuel
 "A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood"
 Systematic Biology. 2003. 52(5):696-704.
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