#!/bin/bash
set -e

pkg="idseq-bench"

export LC_ALL=C.UTF-8
if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
  AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
  trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
fi

cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}"
cd "${AUTOPKGTEST_TMP}"

idseq-bench-generate top_6_genomes.yaml
if [ "$?" -ne "0" ]; then
  echo -e "\e[31m\e[1mTest could not be run.\e[0m"
  exit 1
fi

# Incorrect test - Commented out
# Forwarded to: https://github.com/chanzuckerberg/idseq-bench/issues/41
#  -- Sao I Kuan <saoikuan@gmail.com>  Sun, 14 Jun 2020 00:06:09 +0900
#idseq-bench-generate mutated_rhinovirus_c.yaml   
#if [ "$?" -ne "0" ]; then
#  echo -e "\e[31m\e[1mTest could not be run.\e[0m"
#  exit 1
#fi
